Publications

2020-Present        2010-2019        2000-2009        1990-1999

2025

Title:
Cross-species real time detection of trends in pupil size fluctuation

Authors:
Sharif Kronemer, Victoria Gobo, Catherine Walsh, Joshua Teves, Diana Burk, Somayeh Shahsavarani, Javier Gonzalez-Castillo, Peter Bandettini

Publication:
Behavior Research Methods

Data and Code:
Data
Code

Title:
NORDIC denoising on VASO data

Authors:
Lasse Knudsen, Luca Vizioli, Federico De Martino, Lonike K. Faes, Daniel Handwerker, Steen Moeller, Peter Bandettini, Laurentius Huber

Publication:
Frontiers in Neuroscience

Data and Code:
Data
Code

Title:
Eye metrics are a marker of visual conscious awareness and neural processing in cerebral blindness

Authors:
Sharif Kronemer, Victoria Gobo, Shruti Japee, Eli Merriam, Benjamin Osborne, Peter Bandettini, Tina Liu

Publication:
BioRXiv

Data and Code:
Code

Title:
Blood-nulling versus tissue-suppression: Enhancing integrated VASO and perfusion (VAPER) contrast for laminar fMRI

Authors:
Yuhui Chai, Linqing Li, Rüdiger Stirnberg, Laurentius Huber, Tony Stöcker, Peter Bandettini, Bradley P. Sutton

Publication:
Imaging Neuroscience

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Title:
Sleuthing subjectivity: A review of covert measures of consciousness

Authors:
Sharif Kronemer, Javier Gonzalez-Castillo, Peter Bandettini

Publication:
Nature Reviews Neuroscience

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Title:
T1234: A distortion-matched structural scan solution to misregistration of high resolution fMRI data

Authors:
Chung (Kenny) Kan, Rüdiger Stirnberg, Marcela Montequin, Omer Faruk Gulban, Tyler Morgan, Peter Bandettini, Laurentius Huber

Publication:
Magnetic Resonance in Medicine

Data and Code:
Data
Code

Title:
Rapid decoding of neural information representation from ultra-fast functional magnetic resonance imaging signals

Authors:
Yoichi Miyawaki, Kenshu Koiso, Daniel A. Handwerker, Javier Gonzalez-Castillo, Laurentius Huber, Arman Khojandi, Yuhui Chai, Daniel Glen, Peter A. Bandettini

Publication:
BioRXiv

Data and Code:
Data

Title:
What are we missing? What are we assuming? The need to foster feature discovery tools to improve statistical models

Authors:
Peter Bandettini

Publication:
Cerebral Cortex

Data and Code:

Title:
The human brain mechanisms of afterimages: From networks to cortical layers

Authors:
Sharif Kronemer, Burak Akin, A. Tyler Morgan, Laurentius Huber, Paul A. Taylor, Javier Gonzalez-Castillo, Daniel A. Handwerker, Peter A. Bandettini

Publication:
BioRXiv

Data and Code:

2024

Title:
A unifying model for discordant and concordant results in human neuroimaging studies of facial viewpoint selectivity

Authors:
Cambria Revsine, Javier Gonzalez-Castillo, Elisha Merriam, Peter Bandettini, Fernando Ramirez

Publication:
Journal of Neuroscience

Data and Code:
Code

Title:
Whole-brain multivariate hemodynamic deconvolution for multi-echo fMRI with stability selection

Authors:
Eneko Uruñuela, Javier Gonzalez-Castillo, Charles Zheng, Peter Bandettini, Cesar Caballero-Gaudes

Publication:
Medical Image Analysis

Data and Code:

Title:
Will you read how I will read? Naturalistic fMRI predictors of emergent reading

Authors:
Elizabeth Wat, David Jangraw, Emily Finn, Peter Bandettini, Jonathan Preston, Nicole Landi, Fumiko Hoeft, Stephen Frost, Airey Lau, Gang Chen, Kenneth Pugh, Peter Molfese

Publication:
Neuropsychologia

Data and Code:
Data
Code

Title:
No Replication of Direct Neuronal Activity-related (DIANA) fMRI in Anesthetized Mice

Authors:
Sang-Han Choi, Geun Im, Sangcheon Choi, Xin Yu, Peter Bandettini, Ravi Menon, Seong-Gi Kim

Publication:
Science Advances

Data and Code:

Title:
Unlocking near-whole-brain, layer-specific functional connectivity with 3D VAPER fMRI

Authors:
Yuhui Chai, Tyler Morgan, Hua Xie, Linqing Li, Laurentius Huber, Peter Bandettini, Bradley P. Sutton

Publication:
Imaging Neuroscience

Data and Code:
Data
Code

Title:
Improving laminar fMRI specificity by reducing macrovascular bias revealed by respiration effects

Authors:
Yuhui Chai, A. Tyler Morgan, Daniel Handwerker, Linqing Li, Laurentius Huber, Bradley P. Sutton, Peter Bandettini

Publication:
Imaging Neuroscience

Data and Code:
Code

Title:
Visual imagery vividness correlates with afterimage brightness and sharpness

Authors:
Sharif Kronemer, Micah Holness, Tyler Morgan, Joshua Teves, Javier Gonzalez-Castillo, Daniel Handwerker, Peter Bandettini

Publication:
Neuroscience of Consciousness

Data and Code:
Data
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Title:
Fuzzy ripple artifact in high resolution fMRI: identification, cause, and mitigation

Authors:
Laurentius Huber, Rüdiger Stirnberg, Tyler Morgan, David A. Feinberg, Philipp Ehse, Lasse Knudsen, Omer Faruk Gulban, Kenshu Koiso, Stephanie Swegle, Isabel Gephart, Susan G. Wardle, Andrew Persichetti, Alexander JS Beckett, Tony Stöcker, Nicolas Boulant, Benedikt A. Posner, Peter Bandettini

Publication:
BioRXiv

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Data
Code

Title:
On the Origin of fMRI Species

Authors:
Peter Bandettini and Denis Le Bihan

Publication:
Journal of Magnetic Resonance Imaging

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2023

Title:
Commentary on Pang et al. (2023) Nature

Authors:
Joshua Faskowitz, Daniel Moyer, Daniel Handwerker, Javier Gonzalez-Castillo, Peter Bandettini, Saad Jbabdi, Richard Betzel

Publication:
BioRxiv

Data and Code:
Code

Title:
Inter-subject correlation during long narratives reveals widespread neural correlates of reading ability

Authors:
David Jangraw, Emily Finn, Peter Bandettini, Nicole Landi, Haorui Sun, Fumiko Hoeft, Gang Chen, Kenneth Pugh, Peter Molfese

Publication:
NeuroImage

Data and Code:
Data
Code

Title:
Principles of BOLD Functional MRI

Authors:
Seong-Gi Kim, Peter Bandettini

Publication:
Functional Neuroradiology

Data and Code:

Title:
Brain network dynamics in transitions of consciousness reorganize according to task engagement

Authors:
Samika Kumar, Anat Arzi, Corinne Bareham, Javier Gonzalez-Castillo, Isabel Fernandez, Enzo Tagliazucchi, Pedro Mediano, Peter Bandettini, Tristan Bekinschtein

Publication:
BioRxiv

Data and Code:

Title:
Cortex-wide neural dynamics predict behavioral states and provide a neural basis for resting-state dynamic functional connectivity

Authors:
Somayeh Shahsavarani, David Thibodeaux, Weihao Xu, Sharon Kim, Fatema Lodgher, Chinwendu Nwokeabia, Morgan Cambareri, Alexis Yagielski, Hanzhi Zhao, Daniel Handwerker, Javier Gonzalez-Castillo, Peter Bandettini, Elizabeth Hillman

Publication:
Cell Reports

Data and Code:
Data
Code

Title:
Quantification of regional CMRO2 in human brain using dynamic 17O-MRI at 3T

Authors:
Hao Song, Johannes Fisher, Ali Özen, Burak Akin, Stefan Schumann, Michael Bock

Publication:
Zeitschrift für Medizinische Physik

Data and Code:

Title:
Asymmetric hearing loss is associated with altered white matter mesostructure and cortical measures in temporal and occipital regions

Authors:
Iva Speck, Susan Arndt, Antje Aschendorff, Ann-Kathrin Rauch, Pierre LeVan, Burak Akin, Alexander Rau

Publication:
94th Annual Meeting German Society of Oto-Rhino-Laryngology, Head and Neck Surgery e.V., Bonn

Data and Code:

Title:
The art and science of using quality control to understand and improve fMRI data

Authors:
Joshua Teves, Javier Gonzalez-Castillo, Micah Holness, Megan Spurney, Peter Bandettini, Daniel Handwerker

Publication:
Frontiers in Neuroscience

Data and Code:
Data
Code

Title:
Highlight results, don't hide them: Enhance interpretation, reduce biases and improve reproducibility

Authors:
Paul Taylor, Richard Reynolds, Vince Calhoun, Javier Gonzalez-Castillo, Daniel Handwerker, Peter Bandettini, Amanda Mejia, Gang Chen

Publication:
NeuroImage

Data and Code:
Data
Code

Title:
Manifold Learning for fMRI time-varying FC

Authors:
Javier Gonzalez-Castillo, Isabel Fernandez, Ka Lam, Daniel Handwerker, Francisco Pereira, Peter Bandettini

Publication:
Frontiers in Human Neuroscience

Data and Code:
Code

2022

Title:
Lost in transformation: fMRI power is diminished by unknown variability in methods and people

Authors:
Peter Bandettini

Publication:
Aperture Neuro

Data and Code:
Data

Title:
The challenge of BWAs: Unknown unknowns in feature space and variance

Authors:
Peter Bandettini, Javier Gonzalez-Castillo, D.A. Handwerker, Paul Taylor, Gang Chen, Adam Thomas

Publication:
Med

Data and Code:

Title:
Ultra-slow fMRI fluctuations in the fourth ventricle as a marker of drowsiness

Authors:
Javier Gonzalez-Castillo, Isabel Fernandez, Daniel Handwerker, Peter Bandettini

Publication:
NeuroImage

Data and Code:
Code

Title:
Holo-Hilbert spectral-based noise removal method for EEG high-frequency bands

Authors:
Narges Moradi, Pierre LeVan, Burak Akin, Bradley Goodyear, Roberto Sotero

Publication:
Journal of Neuroscience Methods

Data and Code:

Title:
Layer-specific activation in human primary sensory cortex during tactile temporal prediction error processing

Authors:
Y. Yu, L. Huber, J. Yang, M. Fukunaga, Y. Chai, D. Jangraw, G. Chen, D. Handwerker, P. Molfese, Y. Ejima, N. Sadato, J. Wu, Peter Bandettini

Publication:
Neuroimage

Data and Code:

Title:
The positive-negative mode link between brain connectivity, demographics and behaviour: a pre-registered replication of Smith et al. (2015)

Authors:
Nikhil Goyal, Dustin Moraczewski, Peter Bandettini, Emily Finn, Adam Thomas

Publication:
Royal Society Open Science

Data and Code:

Title:
Sources of Information Waste in Neuroimaging: Mishandling Structures, Thinking Dichotomously, and Over-Reducing Data

Authors:
G. Chen, P. Taylor, J. Stoddard, R. Cox, Peter Bandettini, L Pessoa

Publication:
Aperture Neuro

Data and Code:

Title:
Traveling and Standing waves in the brain

Authors:
Javier Gonzalez-Castillo

Publication:
Nature Neuroscience

Data and Code:

Title:
The NIMH intramural healthy volunteer dataset: A comprehensive MEG, MRI, and behavioral resource

Authors:
Allison Nugent, Adam Thomas, Margaret Mahoney, Alison Gibbons, Jarrod Smith, Antoinette Charles, Jacob Shaw, Jeffrey Stout, Anna Namyst, Arshitha Basavaraj, Eric Earl, Travis Riddle, Joseph Snow, Shruti Japee, Adriana Pavletic, Stephen Sinclair, Vinai Roopchansingh, Peter Bandettini, Joyce Chung

Publication:
Scientific Data

Data and Code:
Data

Title:
Ultra-slow fMRI fluctuations in the fourth ventricle as a marker of drowsiness

Authors:
Javier Gonzalez-Castillo, Isabel Fernandez, Daniel Handwerker, Peter Bandettini

Publication:
NeuroImage

Data and Code:
Code

Title:
Functional Imaging: Magnetic Resonance Imaging

Authors:
Peter Bandettini

Publication:
Neuroscience in the 21st Century

Data and Code:

2021

Title:
Challenges and opportunities of mesoscopic brain mapping with fMRI

Authors:
Peter Bandettini, Laurentius Huber, Emily Finn

Publication:
Current Opinion in Behavioral Neurosciences

Data and Code:

Title:
Topographical and laminar distribution of audiovisual processing within human planum temporale

Authors:
Y. Chai, T. Liu, S. Marrett, L. Li, A. Khojandi, D.A. Handwerker, A. Alink, L. Muckli, Peter Bandettini

Publication:
Progress in Neurobiology

Data and Code:
Code

Title:
Magnetization transfer weighted EPI facilitates cortical depth determination in native fMRI space

Authors:
Y. Chai, L. Li, Y. Wang, B. Poser, J. Duyn, Peter Bandettini

Publication:
NeuroImage

Data and Code:
Data
Code

Title:
Dichotomous thinking and informational waste in neuroimaging

Authors:
G. Chen, P. Taylor, J. Stoddard, R. Cox, Peter Bandettini, L Pessoa

Publication:
bioRxiv

Data and Code:

Title:
TE-dependent analysis of multi-echo fMRI with tedana

Authors:
Elizabeth Dupre, Taylor Salo, Zaki Ahmed, Peter Bandettini, Katherine Bottenhorn, César Caballero-Gaudes, Logan Dowdle, Javier Gonzalez-Castillo, Stephan Heunis, Prantik Kundu, Angela Laird, Ross Markello, Christopher Markiwiecz, Stefano Moia, Isla Staden, Joshua Teves, Eneko Uruñuela, Maryam Vaziri-Pashkam, Kirstie Whitaker, Daniel Handwerker

Publication:
The Journal of Open Source Software

Data and Code:
Code

Title:
How to Interpret Resting-State fMRI: Ask your Participants

Authors:
Javier Gonzalez-Castillo, Julia Kam, Colin Hoy, Peter Bandettini

Publication:
Journal of Neuroscience

Data and Code:

Title:
Layer-dependent functional connectivity methods

Authors:
Laurentius Huber, Emily Finn, Yuhui Chai, Rainer Goebel, Rüdiger Stirnberg, Tony Stöcker, Sean Marrett, Kamil Uludag, Seong-Gi Kim, SoHyun Han, Peter Bandettini, Benedikt Poser

Publication:
Progress in Neurobiology

Data and Code:

Title:
The Haskins Pediatric Atlas: A magnetic-resonance-imaging-based pediatric template and atlas

Authors:
Peter Molfese, Peter Bandettini

Publication:
Pediatric Radiology

Data and Code:

Title:
Linking cortical circuit models to human cognition with laminar fMRI

Authors:
Y. Yang, L. Huber, Y. Yu, Peter Bandettini

Publication:
Neuroscience and Biobehavioral Reviews

Data and Code:

Title:
Different activation signatures in the primary sensorimotor and higher-level regions for haptic three-dimensional curved surface exploration

Authors:
Jiajia Yang, Peter Molfese, Yinghua Yu, Daniel Handwerker, Gang Chen, Paul Taylor, Yoshimichi Ejima, Jinglong Wu, Peter Bandettini

Publication:
NeuroImage

Data and Code:
Data

Title:
Brainhack: Developing a culture of open, inclusive, community-driven neuroscience

Authors:
Rémi Gau, Stephanie Noble, Katja Heuer, Katherine Bottenhorn, Isil Bilgin, Yu-Fang Yang, Julia Huntenburg, Johanna Bayer, Richard Bethlehem, Shawn Rhoads, Christoph Vogelbacher, Valentina Borghesani, Elizabeth Levitis, Hao-Ting Wang, Sofie Van Den Bossche, Xenia Kobeleva, Jon Legarreta, Samuel Guay, Selim Atay, Gael Varoquaux, Dorien Huijser, Malin Sandström, Peer Herholz, Samuel Nastase, AmanPreet Badhwar, Guillaume Dumas, Simon Schwab, Stefano Moia, Michael Dayan, Yasmine Bassil, Paula Brooks, Matteo Mancini, James Shine, David O'Connor, Xihe Xie, Davide Poggiali, Patrick Friedrich, Anibal Heinsfeld, Lydia Riedl, Roberto Toro, Cesar Caballero-Gaudes, Anders Eklund, Kelly Garner, Christopher Nolan, Damion Demeter, Fernando Barrios, Junaid Merchant, Elizabeth McDevitt, Robert Oostenveld, Cameron Craddock, Ariel Rokem, Andrew Doyle, Satrajit Ghosh, Aki Nikolaidis, Olivia Stanley, Eneko Uruñuela, Nasim Anousheh, Aurina Arnatkeviciute, Guillaume Auzias, Dipankar Bachar, Elise Bannier, Ruggero Basanisi, Arshitha Basavaraj, Marco Bedini, Pierre Bellec, Austin Benn, Kathryn Berluti, Steffen Bollmann, Saskia Bollmann, Claire Bradley, Jesse Brown, Augusto Buchweitz, Patrick Callahan, Micaela Chan, Bramsh Chandio, Theresa Cheng, Sidhant Chopra, Ai Chung, Thomas Close, Etienne Combrisson, Giorgia Cona, Todd Constable, Claire Cury, Kamalaker Dadi, Pablo Damasceno, Samir Das, Fabrizio Fallani, Krista DeStasio, Erin Dickie, Lena Dorfschmidt, Eugene Duff, Elizabeth Dupre, Sarah Dziura, Nathalia Esper, Oscar Esteban, Shreyas Fadnavis, Guillaume Flandin, Jessica Flannery, John Flournoy, Stephanie Forkel, Alexandre Franco, Saampras Ganesan, Siyuan Gao, José Alanis, Eleftherios Garyfallidis, Tristan Glatard, Enrico Glerean, Javier Gonzalez-Castillo, Cassandra van Praag, Abigail Greene, Geetika Gupta, Catherine Hahn, Yaroslav Halchenko, Daniel Handwerker, Thomas Hartmann, Valérie Hayot-Sasson, Stephan Heunis, Felix Hoffstaedter, Daniela Hohmann, Corey Horien, Horea-Ioan Ioanas, Alexandru Iordan, Chao Jiang, Michael Joseph, Jason Kai, Agah Karakuzu, David Kennedy, Anisha Keshavan, Ali Khan, Gregory Kiar, Christiaan Klink, Vincent Koppelmans, Serge Koudoro, Angela Laird, Georg Langs, Marissa Laws, Roxane Licandro, Sook-Lei Liew, Tomislav Lipic, Krisanne Litinas, Daniel Lurie, Désirée Lussier, Christopher Madan, Lea-Theresa Mais, Sina L, J.P. Manzano-Patron, Dimitra Maoutsa, Matheus Marcon, Daniel Margulies, Giorgio Marinato, Daniele Marinazzo, Christopher Markiewicz, Camille Maumet, Felipe Meneguzzi, David Meunier, Michael Milham, Kathryn Mills, Davide Momi, Clara Moreau, Aysha Motala, Iska Moxon-Emre, Thomas Nichols, Dylan Nielson, Gustav Nilsonne, Lisa Novello, Caroline O'Brien, Emily Olafson, Lindsay Oliver, John Onofrey, Edwina Orchard, Kendra Oudyk, Patrick Park, Mahboobeh Parsapoor, Lorenzo Pasquini, Scott Peltier, Cyril Pernet, Rudolph Pienaar, Pedro Pinheiro-Chagas, Jean-Baptiste Poline, Anqi Qiu, Tiago Quendera, Laura Rice, Joscelin Rocha-Hidalgo, Saige Rutherford, Mathias Scharinger, Dustin Scheinost, Deena Shariq, Thomas Shaw, Viviana Siless, Molly Simmonite, Nikoloz Sirmpilatze, Hayli Spence, Julia Sprenger, Andrija Stajduhar, Martin Szinte, Sylvain Takerkart, Angela Tam, Link Tejavibulya, Michel de Schotten, Ina Thome, Laura da Silva, Nicolas Traut, Lucina Uddin, Antonino Vallesi, John VanMeter, Nandita Vijayakumar, Matteo Castello, Jakub Vohryzek, Jak_a Vukojevi_, Kirstie Whitaker, Lucy Whitmore, Steve Wideman, Suzanne Witt, Hua Xie, Ting Xu, Chao-Gan Yan, Fang-Cheng Yeh, B.T. Yeo, Xi-Nian Zuo

Publication:
Neuron

Data and Code:

2020

Title:
Theta-burst TMS to the posterior superior temporal sulcus decreases resting-state fMRI connectivity across the face processing network

Authors:
Handwerker DA, Ianni G, Gutierrez B, Roopchansingh V, Gonzalez-Castillo J, Chen G, Peter Bandettini, Ungerleider LG, Pitcher D

Publication:
Network Neuroscience

Data and Code:
Code

Title:
Idiosynchrony: From shared responses to individual differences during naturalistic neuroimaging

Authors:
Emily Finn, Enrico Glerean, Arman Khojandi, Dylan Nielson, Peter Molfese, Daniel Handwerker, Peter Bandettini

Publication:
NeuroImage

Data and Code:
Code

Title:
Sub-millimeter fMRI reveals multiple topographical digit representations that form action maps in human motor cortex

Authors:
Laurentius Huber, Emily Finn, Daniel Handwerker, Marlene Bönstrup, Daniel Glen, Sriranga Kashyap, Dimo Ivanov, Natalia Petridou, Sean Marrett, Jozien Goense, Benedikt Poser, Peter Bandettini

Publication:
NeuroImage

Data and Code:
Data

Title:
Towards Expanded Utility of Real Time fMRI Neurofeedback in Clinical Applications

Authors:
Gonzalez-Castillo J, Ramot M, Momenan R

Publication:
Frontiers in Human Neuroscience

Data and Code:

Title:
Fast detection and reduction of local transient artifacts in resting-state fMRI

Authors:
Hang Jo, Richard Reynolds, Stephen Gotts, Daniel Handwerker, Irena Balzekas, Alex Martin, Robert Cox, Peter Bandettini

Publication:
Computers in Biology and Medicine

Data and Code:

Title:
Language lateralization from task-based and resting-state functional MRI in patients with epilepsy

Authors:
Rolinski R, You X, Gonzalez-Castillo J, Norato G, Reynolds RC, Inati SK, Theodore WH

Publication:
Human Brain Mapping

Data and Code: